Please use this identifier to cite or link to this item: http://hdl.handle.net/2440/119028
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dc.contributor.authorZhang, Z.en
dc.contributor.authorCui, X.en
dc.contributor.authorJiang, J.en
dc.contributor.authorXiao, H.en
dc.contributor.authorWang, H.en
dc.contributor.authorWu, Q.en
dc.contributor.authorHabili, N.en
dc.contributor.authorLi, S.en
dc.date.issued2018en
dc.identifier.citationJournal of Virological Methods, 2018; 254:13-17en
dc.identifier.issn0166-0934en
dc.identifier.issn1879-0984en
dc.identifier.urihttp://hdl.handle.net/2440/119028-
dc.description.abstractThree of the five well-known viroids infecting grapevine belong to the genus Apscaviroid. Grapevine latent viroid (GLVd) is a novel grapevine viroid. Although GLVd has the typical sequence motifs of the genus Apscaviroid, it is still an unassigned viroid. In this study, a sensitive, convenient, and rapid one-step RT-qPCR method using hydrolysis probes for the detection of GLVd was developed. Survey and bioassays were also performed for this viroid. Using this method in the survey of GLVd, a low infection rate of 2/226 in a grapevine germplasm resource nursery and a demonstration vineyard in China was determined. Bioassays using agroinfiltration showed that GLVd can infect 'Kyoho' grapevine but not any of the tested herbaceous plants. Furthermore, sequence variability of GLVd was analyzed in six GLVd-infected grapevines. Sequencing revealed a predominant variant with only a few nucleotide changes compared with the reference variant of GLVd. Therefore, the developed RT-qPCR method should be helpful for determining GLVd in other vineyards of the world. The low infection rate, host range, and sequence variability of GLVd have important implications to further improve our knowledge on this novel grapevine viroid.en
dc.description.statementofresponsibilityZhixiang Zhang, Xiyun Cui, Jihong Jiang, Hong Xiao, Hongqing Wang, Qi Wu, Nuredin Habili, Shifang Lien
dc.language.isoenen
dc.publisherElsevieren
dc.rights© 2018 Elsevier B.V. All rights reserved.en
dc.subjectGrapevine latent viroid; RT-qPCR; bioassay analysis; occurrenceen
dc.titleImproved detection of grapevine latent viroid by RT-qPCR, its bioassay analysis, and its rare occurrence worldwideen
dc.typeJournal articleen
dc.identifier.rmid0030081806en
dc.identifier.doi10.1016/j.jviromet.2018.01.007en
dc.identifier.pubid396250-
pubs.library.collectionAgriculture, Food and Wine publicationsen
pubs.library.teamDS14en
pubs.verification-statusVerifieden
pubs.publication-statusPublisheden
dc.identifier.orcidWu, Q. [0000-0001-8642-0783]en
dc.identifier.orcidHabili, N. [0000-0001-5969-9547]en
Appears in Collections:Agriculture, Food and Wine publications

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