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Type: Journal article
Title: EST-based gene discovery in pig: virtual expression patterns and comparative mapping to human
Author: Tuggle, Christopher K.
Green, Jon A.
Fitzsimmons, Carolyn Jean
Woods, Rami
Prather, Randall S.
Malchenko, Sergei
Soares, Bento M.
Kucaba, Tamara
Crouch, Keith
Smith, Christina
Tack, Dylan
Robinson, Natalie
O'Leary, Brian
Scheetz, Todd
Casavant, Thomas
Pomp, Daniel
Edeal, Brad J.
Zhang, Yuandan
Rothschild, Max F.
Garwood, Kevin
Beavis, William
Citation: Mammalian Genome, 2003; 14 (8):565-579
Publisher: Springer
Issue Date: 2003
ISSN: 0938-8990
School/Discipline: School of Agriculture, Food and Wine : Agricultural and Animal Science
Abstract: A molecular understanding of porcine reproduction is of biological interest and economic importance. Our Midwest Consortium has produced cDNA libraries containing the majority of genes expressed in major female reproductive tissues, and we have deposited into public databases 21,499 expressed sequence tag (EST) gene sequences from the 3’ end of clones from these libraries. These sequences represent 10,574 different genes, based on sequence comparison among these data, and comparison with existing porcine ESTs and genes indicate as many as 4652 of these EST clusters are novel. In silico analysis identified sequences that are expressed in specific pig tissues or organs and confirmed the broad expression in pig for many genes ubiquitously expressed in human tissues. Furthermore, we have developed computer software to identify sequence similarity of these pig genes with their human counterparts, and to extract the mapping information of these human homologues from genome databases. We demonstrate the utility of this software for comparative mapping by localizing 61 genes on the porcine physical map for Chromosomes (Chrs) 5, 10, and 14.
Description: The original publication can be found at
DOI: 10.1007/s00335-002-2263-7
Appears in Collections:Agriculture, Food and Wine publications

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