Please use this identifier to cite or link to this item: https://hdl.handle.net/2440/92399
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dc.contributor.authorBidabadi, M.en
dc.contributor.authorShiran, B.en
dc.contributor.authorFallahi, H.en
dc.contributor.authorRafiei, F.en
dc.contributor.authorEsmaeili, F.en
dc.contributor.authorEbrahimie, E.en
dc.date.issued2015en
dc.identifier.citationJournal of Forest Research, 2015; 20(4):403-410en
dc.identifier.issn1341-6979en
dc.identifier.issn1610-7403en
dc.identifier.urihttp://hdl.handle.net/2440/92399-
dc.description.abstractDrought is the major abiotic stress with adverse effects on growth and productivity of plants. It induces the expression of various genes that are involved in stress response and tolerant/sensitive phenotypes. In this study, the expression of several genes were analyzed in response to dehydration in almond (Prunus dulcis 'Sefied') to shed light on the underlying genetic basis of water-deficit tolerance in almond. The advantages of using almond as a model system for studying dehydration tolerance in woody species are its small diploid genome and its adaptation to drought. Differential expression technique, cDNA-AFLP (amplified fragment length polymorphism), was used to find transcripts accumulated in young trees subjected to water-deficit treatment. Twenty transcript-derived fragments (TDFs) with differential expression between control and stress conditions were generated, amplified, and sequenced. The TDFs showing high homology with genes having known functions were validated by quantitative real-time PCR and their possible function(s) were discussed. These genes include: 2-deoxyglucose-6-phosphate phosphatase, protein kinase MK5 (AFC2) and urease, which up-regulated by 1.61, 2.39 and 4.87 fold under the water-deficit stress condition, respectively. In addition, network analysis unraveled a drought response mechanism displaying activation of the ABA signaling pathway via phosphorylation by 2-deoxyglucose-6-phosphate phosphatase and protein kinase MK5. Protein kinase MK5 was found to be a central element in the drought response network, displaying numerous interactions with RNA-splicing proteins, the sugar-mediated signaling pathway and an epigenetics response (histone phosphorylation).en
dc.description.statementofresponsibilityMaryam Shirani Bidabadi, Behrouz Shiran, Hossein Fallahi, Fariba Rafiei, Fazileh Esmaeili & Esmaeil Ebrahimieen
dc.language.isoenen
dc.publisherSpringer Japanen
dc.rights© The Japanese Forest Society and Springer Japan 2015en
dc.subjectcDNA-AFLP; Gene Network; Prunus dulcis ‘Sefied’; Transcript-derived fragments (TDFs; Waterdeficit stressen
dc.titleIdentification of differential expressed transcripts of almond (Prunus dulcis ‘Sefied’) in response to water-deficit stress by cDNA-AFLPen
dc.typeJournal articleen
dc.identifier.doi10.1007/s10310-015-0494-1en
pubs.publication-statusPublisheden
dc.identifier.orcidEbrahimie, E. [0000-0002-4431-2861]en
Appears in Collections:Molecular and Biomedical Science publications

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