Please use this identifier to cite or link to this item: http://hdl.handle.net/2440/99223
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dc.contributor.authorBissett, A.en
dc.contributor.authorFitzgerald, A.en
dc.contributor.authorMeintjes, T.en
dc.contributor.authorMele, P.en
dc.contributor.authorReith, F.en
dc.contributor.authorDennis, P.en
dc.contributor.authorBreed, M.en
dc.contributor.authorBrown, B.en
dc.contributor.authorBrown, M.en
dc.contributor.authorBrugger, J.en
dc.contributor.authorByrne, M.en
dc.contributor.authorCaddy-Retalic, S.en
dc.contributor.authorCarmody, B.en
dc.contributor.authorCoates, D.en
dc.contributor.authorCorrea, C.en
dc.contributor.authorFerrari, B.en
dc.date.issued2016en
dc.identifier.citationGigaScience, 2016; 5(1):1-11en
dc.identifier.issn2047-217Xen
dc.identifier.issn2047-217Xen
dc.identifier.urihttp://hdl.handle.net/2440/99223-
dc.descriptionCorrected by: Erratum: Introducing BASE: The Biomes of Australian Soil Environments soil microbial diversity database [GigaScience. 5, 1, (2016) (1-11)] DOI: 10.1186/s13742-016-0126-5. In GigaScience 6(5):1, the authorship list should have included Leon Court, who was responsible for sample collection and preparation, sampling design and sequencing method design. The authors regret this omission.en
dc.description.abstractBACKGROUND Microbial inhabitants of soils are important to ecosystem and planetary functions, yet there are large gaps in our knowledge of their diversity and ecology. The ‘Biomes of Australian Soil Environments’ (BASE) project has generated a database of microbial diversity with associated metadata across extensive environmental gradients at continental scale. As the characterisation of microbes rapidly expands, the BASE database provides an evolving platform for interrogating and integrating microbial diversity and function. FINDINGS BASE currently provides amplicon sequences and associated contextual data for over 900 sites encompassing all Australian states and territories, a wide variety of bioregions, vegetation and land-use types. Amplicons target bacteria, archaea and general and fungal-specific eukaryotes. The growing database will soon include metagenomics data. Data are provided in both raw sequence (FASTQ) and analysed OTU table formats and are accessed via the project’s data portal, which provides a user-friendly search tool to quickly identify samples of interest. Processed data can be visually interrogated and intersected with other Australian diversity and environmental data using tools developed by the ‘Atlas of Living Australia’. CONCLUSIONS Developed within an open data framework, the BASE project is the first Australian soil microbial diversity database. The database will grow and link to other global efforts to explore microbial, plant, animal, and marine biodiversity. Its design and open access nature ensures that BASE will evolve as a valuable tool for documenting an often overlooked component of biodiversity and the many microbe-driven processes that are essential to sustain soil function and ecosystem services.en
dc.description.statementofresponsibilityAndrew Bissett, Anna Fitzgerald, Thys Meintjes, Pauline M. Mele, Frank Reith, Paul G. Dennis, Martin F. Breed, Belinda Brown, Mark V. Brown, Joel Brugger, Margaret Byrne, Stefan Caddy-Retalic, Bernie Carmody, David J. Coates, Carolina Correa, Belinda C. Ferrari, Vadakattu V. S. R. Gupta, Kelly Hamonts, Asha Haslem, Philip Hugenholtz, Mirko Karan, Jason Koval, Andrew J. Lowe, Stuart Macdonald, Leanne McGrath, David Martin, Matt Morgan, Kristin I. North, Chanyarat Paungfoo-Lonhienne, Elise Pendall, Lori Phillips, Rebecca Pirzl, Jeff R. Powell, Mark A. Ragan, Susanne Schmidt, Nicole Seymour, Ian Snape, John R. Stephen, Matthew Stevens, Matt Tinning, Kristen Williams, Yun Kit Yeoh, Carla M. Zammit, and Andrew Youngen
dc.language.isoenen
dc.publisherBioMed Centralen
dc.rights© 2016 Bissett et al. Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.en
dc.subjectMicrobiology; Microbial; ecology; Soil; biology; Australia; Database; Microbial; diversity; Metagenomicsen
dc.titleIntroducing BASE: the Biomes of Australian Soil Environments soil microbial diversity databaseen
dc.typeJournal articleen
dc.identifier.rmid0030047772en
dc.identifier.doi10.1186/s13742-016-0126-5en
dc.identifier.pubid250148-
pubs.library.collectionMolecular and Biomedical Science publicationsen
pubs.library.teamDS01en
pubs.verification-statusVerifieden
pubs.publication-statusPublisheden
dc.identifier.orcidBreed, M. [0000-0001-7810-9696]en
dc.identifier.orcidCaddy-Retalic, S. [0000-0003-4870-4202]en
Appears in Collections:Molecular and Biomedical Science publications

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