Please use this identifier to cite or link to this item: http://hdl.handle.net/2440/37007
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Type: Journal article
Title: Four New Avian Mitochondrial Genomes Help Get to Basic Evolutionary Questions in the Late Cretaceous
Author: Harrison, G.
McLenachan, P.
Phillips, M.
Slack, K.
Cooper, A.
Penny, D.
Citation: Molecular Biology and Evolution, 2004; 21(6):974-983
Publisher: Oxford Univ Press
Issue Date: 2004
ISSN: 0737-4038
1537-1719
Abstract: Good phylogenetic trees are required to test hypotheses about evolutionary processes. We report four new avian mitochondrial genomes, which together with an improved method of phylogenetic analysis for vertebrate mt genomes give results for three questions in avian evolution. The new mt genomes are: magpie goose (Anseranas semipalmata), an owl (morepork, Ninox novaeseelandiae); a basal passerine (rifleman, or New Zealand wren, Acanthisitta chloris); and a parrot (kakapo or owl-parrot, Strigops habroptilus). The magpie goose provides an important new calibration point for avian evolution because the well-studied Presbyornis fossils are on the lineage to ducks and geese, after the separation of the magpie goose. We find, as with other animal mitochondrial genomes, that RY-coding is helpful in adjusting for biases between pyrimidines and between purines. When RY-coding is used at third positions of the codon, the root occurs between paleognath and neognath birds (as expected from morphological and nuclear data). In addition, passerines form a relatively old group in Neoaves, and many modern avian lineages diverged during the Cretaceous. Although many aspects of the avian tree are stable, additional taxon sampling is required.
Keywords: Animals; Birds; DNA, Mitochondrial; Bayes Theorem; Sequence Analysis, DNA; Evolution, Molecular; Phylogeny; Base Sequence; Models, Biological; Models, Genetic; Classification; Molecular Sequence Data; Australia; New Zealand
RMID: 0020065927
DOI: 10.1093/molbev/msh065
Appears in Collections:Earth and Environmental Sciences publications
Environment Institute Leaders publications

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