PCIT: an R package for weighted gene co-expression networks based on partial correlation and information theory approaches
Date
2010
Authors
Watson-Haigh, N.
Kadarmideen, H.
Reverter, A.
Editors
Advisors
Journal Title
Journal ISSN
Volume Title
Type:
Journal article
Citation
Bioinformatics, 2010; 26(3):411-413
Statement of Responsibility
Nathan S. Watson-Haigh, Haja N. Kadarmideen and Antonio Reverter
Conference Name
Abstract
Summary: We make the PCIT algorithm, used for detecting meaningful gene–gene associations in co-expression networks, available as an R package. Automatic detection of a suitable parallel environment is used such that scripts are portable between parallel and non-parallel environments with no modification of the script. Availability and implementation: Source code and binaries freely available (under GPL-3) for download via CRAN at http://cran.r-project.org/package=PCIT, implemented in R and supported on Linux and MS Windows.
School/Discipline
Dissertation Note
Provenance
Description
First published online: December 9, 2009
Access Status
Rights
© The Author 2009