Population structure of the Indonesian giant tiger shrimp Penaeus monodon: a window into evolutionary similarities between paralogous mitochondrial DNA sequences and their genomes

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dc.contributor.authorAbdul-Aziz, M.A.
dc.contributor.authorSchoefl, G.
dc.contributor.authorMrotzek, G.
dc.contributor.authorHaryanti, H.
dc.contributor.authorSugama, K.
dc.contributor.authorSaluz, H.P.
dc.date.issued2015
dc.description.abstractHere we used both microsatellites and mtCR (mitochondrial DNA control region) sequences as genetic markers to examine the genetic diversity and population structure of Penaeus monodon shrimp from six Indonesian regions. The microsatellite data showed that shrimp from the Indian and the Pacific Ocean were genetically distinct from each other. It has been reported previously that P. monodon mtCR sequences from the Indo-Pacific group into two major paralogous clades of unclear origin. Here we show that the population structure inferred from mtCR sequences matches the microsatellite-based population structure for one of these clades. This is consistent with the notion that this mtCR clade shares evolutionary history with nuclear DNA and may thus represent nuclear mitochondrial pseudogenes (Numts).
dc.description.statementofresponsibilityMuslihudeen A. Abdul-Aziz, Gerhard Schöfl, Grit Mrotzek, Haryanti Haryanti, Ketut Sugama, Hans Peter Saluz
dc.identifier.citationEcology and Evolution, 2015; 5(17):3570-3584
dc.identifier.doi10.1002/ece3.1616
dc.identifier.issn2045-7758
dc.identifier.issn2045-7758
dc.identifier.orcidAbdul-Aziz, M.A. [0000-0001-5600-0972]
dc.identifier.urihttp://hdl.handle.net/2440/95361
dc.language.isoen
dc.publisherWiley Open Access
dc.rights© 2015 The Authors. Ecology and Evolution published by John Wiley & Sons Ltd. This is an open access article under the terms of the Creative Commons Attribution License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited
dc.source.urihttps://doi.org/10.1002/ece3.1616
dc.subjectMicrosatellite; mtCR; mtDNA; Numts; paralogous sequences; Penaeus monodon
dc.titlePopulation structure of the Indonesian giant tiger shrimp Penaeus monodon: a window into evolutionary similarities between paralogous mitochondrial DNA sequences and their genomes
dc.typeJournal article
pubs.publication-statusPublished

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